San Marco, and Savonarola; Angelico's Annunciation is worth the admission alone. You can usually find somewhere in the cloisters just to sit away from the crowds. So much of Florence's history revolved around this convent. If I could visit only one place in Florence this would be it.
Cappella Brancacci: Masaccio's masterpiece.
San Miniato: beautiful small church. Don’t forget the graveyard, and then there's the view of Florence.
San Lorenzo: the old sacristy as well as Brunelleschi's brilliant interior.
Oh and Santa Maria Novella, Santa Croce, Cappelle Medici...
Museo di San Marco: Piazza San Marco; tel: +39 55 238 8608
Cappella Brancacci: Piazza del Carmine; tel: +39 055 238 21 95
San Miniato: Via Monte Alle Croci, 34; tel: 055 2342768
Basilica di San Lorenzo: Piazza San Lorenzo
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